Vep github

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants. Basic instructions:. See documentation for full installation instructions.

This plugin requires a pedigree. SpliceVault - predicts exon-skipping events and activated cryptic splice sites based on the most common mis-splicing events around a splice site DosageSensitivity - annotates the likelihood of a gene being haploinsufficient or triplosensitive VARITY - adds pre-calculated pathogenicity scores of rare human missense variants. Skip to content. You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window.

Vep github

Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines. A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format vcf files. This repo contains the code to dockerize a ensembl REST server on your own local machine. It allows the user to specify a different configuration to a locally hosted ensembl database and tweeking of the throtelling settings setup by default by ensembl for their own servers. Add a description, image, and links to the ensembl-vep topic page so that developers can more easily learn about it. Curate this topic. To associate your repository with the ensembl-vep topic, visit your repo's landing page and select "manage topics. Learn more. Skip to content. You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. You switched accounts on another tab or window. Dismiss alert.

Updated Nov 18,

BEstimate, a Python module that systematically analyses guide RNA gRNA targetable sites across given sequences for given Base Editors, and functional and clinical effects of the potential edits on the resulting proteins. Add a description, image, and links to the vep-annotation topic page so that developers can more easily learn about it. Curate this topic. To associate your repository with the vep-annotation topic, visit your repo's landing page and select "manage topics. Learn more. Skip to content. You signed in with another tab or window.

Download ensembl-vep package see below the different ways to download it and then follow the installation instructions. Users without the git utility installed may download a zip file from GitHub, though we would always recommend using git if possible. Previously VEP was available as part of the ensembl-tools package see the Ensembl archive site for documentation. The following downloads are available for archival purposes. Show versions. Versions of VEP up to and including 87 were released as part of the ensembl-tools package.

Vep github

Due to scheduled network maintenance work, all Ensembl websites will be briefly unavailable on Wednesday 17 January between and GMT. Download ensembl-vep package see below the different ways to download it and then follow the installation instructions. Users without the git utility installed may download a zip file from GitHub, though we would always recommend using git if possible. Previously VEP was available as part of the ensembl-tools package see the Ensembl archive site for documentation.

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Dismiss alert. Here are 4 public repositories matching this topic This plugin requires a pedigree. Variant annotation of vcf file using exac and vep. Here are 24 public repositories matching this topic Report repository. Star 3. You switched accounts on another tab or window. You signed out in another tab or window. Star 4. New plugin supported on CLI, REST, and web : mutfunc - predicts destabilization of protein structure, interaction and others features by a variant GRCh38 only Plugin feature extension: IntAct - four new species are now supported: rat, chicken red jungle fowl , yeast, and Arabidopsis. Characterization of Germline variants. Dismiss alert.

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You signed in with another tab or window. Updated Aug 23, Shell. SpliceVault - predicts exon-skipping events and activated cryptic splice sites based on the most common mis-splicing events around a splice site DosageSensitivity - annotates the likelihood of a gene being haploinsufficient or triplosensitive VARITY - adds pre-calculated pathogenicity scores of rare human missense variants. Updated Sep 23, Haskell. Learn more. This plugin requires a pedigree. Skip to content. Branches Tags. The bioperl-ext package is no longer maintained and requires some tweaking to install. Previous 1 2 3 4 5 6 7 Next. Girirajan Lab VCF file annotation pipeline. Folders and files Name Name Last commit message. Star 0. Latest commit History 2, Commits. Add a description, image, and links to the vep-annotation topic page so that developers can more easily learn about it.